squaredDist

maxDistances

pair.distances

toPython

rawDataToPython

saveForPython

slidingAverageAt

compare.gammas

getExpressionByChromosome.MACATData

getExpressionByClass.MACATData

getExpression.MACATData

getExpressionByProbeset.MACATData

demo.part

crossvalParam

evalParams

getFromDb


  Auxiliary functions for internal usage by other MACAT functions.
  Normally not called by user.


internal

Auxiliary Computation Functions

This library contains functions to investigate links
between differential gene expression and the chromosomal
localization of the genes. MACAT is motivated by the common
observation of phenomena involving large chromosomal regions
in tumor cells. MACAT is the implementation of a statistical
approach for identifying significantly differentially
expressed chromosome regions. The functions have been tested
on a publicly available data set about acute lymphoblastic
leukemia (Yeoh et al.Cancer Cell 2002), which is provided in
the library 'stjudem'.

J Toedling

macat

MicroArray Chromosome Analysis Tool

Auxiliary Computation Functions function

Auxiliary functions for internal usage by other MACAT functions.
  Normally not called by user.

Auxiliary Functions for Computations in MACAT

Auxiliary Computation Functions: Auxiliary Functions for Computations in MACAT

Description

Arguments

Details

See Also